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 Publications

Publications from the Project

  • Liu B., de la Fuente A. and Hoeschele I. (2007a) "From genetics to gene networks: Evaluating approaches for integrative analysis of genetic marker and gene expression data for the purpose of gene network inference"     BMC Genomics (in revision)

    Manuscript text and figures :      Text  (download: 673 KB)      Figure 1   (download: 1170 KB)      Figure 2   (download: 201 KB)      Figure 3   (download: 18 KB)

  • Liu B., de la Fuente A. and Hoeschele I. (2007b) "From genetics to gene networks: Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments"     BMC Genomics (in revision)

    Manuscript text and figures :      Text  (download: 880 KB)      Figure 1   (download: 456 KB)

  • Mideros S., Nita M. and Dorrance A.E. (2007) "Characterization of components of partial resistance, Rps2, and root resistance to Phytophthora sojae in soybean" Phytopathology. 97: 655-662

  • Zhou L., Tripathy S., Torto-Alalibo T., Li H., Qutob D., Gijzen M.,Saghai Maroof M.A. and Tyler B.M. (2006) "Defense-related Gene Expression in Compatible and Incompatible Soybean-Phytophthora sojae Interactions." (to be submitted)

  • Mideros-Mora S.X. (2006) Study of incomplete resistance to Phytophthora sojae in soybean. M.S. Thesis, The Ohio State University (in progess)

  • Mideros-Mora S.X. and Dorrance A.E. (2006) Cytological study of soybean partial resistance, Rps2 and root resitance to Phytophthora sojae. (in preparation)

  • Bing N. and I. Hoeschele I. (2005) "Genetical Genomics Analysis of a Yeast Segregant Population for Transcription Network Inference." Genetics 170: 533-542

  • Vega-Sanchez M.E., Redinbaugh M.G., Constanzo S. and Dorrance A.E. (2005) Spatial and temporal expression analysis of defence related genes in soybean cultivars with different levels of partial resistance to Phytophthora sojae. Physiol. and Molec. Plant Pathology 66:175-182

  • Hoeschele I. and Li H. (2005) "A Note on Joint versus Gene-Specific Mixed Model Analysis of Microarray Gene Expression Data." Biostatistics 6: 183-186.

  • Bing N. (2004) "Statistical analysis of gene expression profiles: Transcription network inference and sample classification." Ph.D. Dissertation, Genetics, Bioinformatics and Computational Biology Program, Virginia Tech.

  • De la Fuente A., Bing N., Hoeschele I. and Mendes P. (2004) "Discovery of meaningful associations in genomic data using partial correlation coefficients." Bioinformatics 20: 3565-3574.

  • Vega-Sanchez M.E. (2003) Defense related gene expression in soybean cultivars with different levels of partial resistance to Phytophthora sojae. M.S. Thesis, The Ohio State University.


Other Related Publications

    Gordon S.G., St.Martin S.K. and Dorrance A.E (2006) Rps8 maps to a resistance gene-rich region on soybean molecular linkage group F. Crop Sci. 46:168-173

  • Hwang, T. Y., J. K. Moon, S. Yu, K. Yang, H. S. Kim, S. Mohankumar, H. M. Kim, M. A. Saghai Maroof and S. C. Jeong. (2006) "Application of comparative genomics in development of molecular markers tightly linked to the Rsv4 gene in soybean." Genome (available on-line).

  • Bing, N., Hoeschele, I., Ye, K., and Eilertsen, K.J. (2004) "Finite Mixture Model Analysis of Microarray Expression Data on Samples of Uncertain Biological Type with Application to Reproductive Efficiency. Veterinary Immunology and Immunopathology" (submitted)

  • Hayes, A. J., S. C. Jeong, M. A. Gore, Y. G. Yu, G. R. Buss, S. A. Tolin, and M. A. Saghai Maroof.(2004) "Recombination within a Nucleotide-Binding-Site/Leucine-Rich_Repeat gene cluster produces new variants conditioning resistance to soybean mosaic virus in soybeans." Genetics 166:493-503.

  • S. COSTANZO, M.G. Redinbaugh and A.E. Dorrance, (2004) "Potential Components of Partial Resistance Identified by Northern Analysis of Nine Defense-Related Genes in Two Soybean Cultivars." (In preparation)

  • Shan, W-X, Cao, M., Leung, D. and Tyler, B.M. (2004) "The Avr1b Locus of Phytophthora sojae Encodes an Elicitor and A Regulator Required for Avirulence on Soybean Plants Carrying Resistance Gene Rps1b" MPMI 17(4), 394-403.

  • Jeong, S. and M. A. Saghai Maroof. (2004) "Detection and genotyping of SNPs tightly linked to two disease resistance loci Rsv1 and Rsv3, of soybean." Plant Breeding 123:305-310.

  • Henderson, D.A. and Hoeschele, I. (2003) "Bayesian exploratory factor analysis with an application to the identification of metabolic pathways from microarray expression data. Technical Report."

  • Burnham, K.D., Dorrance, A.E., VanToai, T.T. and St.Martin, S.K. (2003) "Quantitative trait loci for partial resistance to Phytophthora sojae in soybean. Crop Sci. 43:1610-1617."

  • Burnham, K.D. Dorrance, A.E., Francis, D.M., Fioritto, R.J. and St.Martin, S.K. (2003) "Rps8, A new locus in soybean for resistance to Phytophthora sojae. Crop Sci. 43:101-105."

  • Dorrance, A.E., McClure, S.A. and St.Martin, S.K. (2003) "Effect of partial resistance on Phytophthora root and stem rot incidence and yield of soybeans in Ohio. Plant Dis. 87: 308-312."

  • Dorrance, A.E., McClure, S.A. and de Silva, A. (2003) "Pathogenic Diversity of Phytophthora sojae in Ohio soybean fields. Plant Dis. 87:139-146."

  • Gore, M. A., A. J. Hayes, S. C. Jeong, Y. G. Yue, G. R. Buss, and M. A. Saghai Maroof,(2002) "Mapping tightly linked genes controlling potyvirus infection at the Rsv1 and Rpv1 region in soybean". Genome 45:592-599.

  • Gore, M. A., A. J. Hayes, S. C. Jeong, Y. G. Yue, G. R. Buss, and M. A. Saghai Maroof,(2002) "Mapping tightly linked genes controlling potyvirus infection at the Rsv1 and Rpv1 region in soybean". Genome 45:592-599.

  • MacGregor, T., Bhattacharya, M., Tyler, B.M., Bhat, R., Schmitthenner, A.F. and Gijzen, M. (2002) "Genetic and physical mapping of Avr1a in Phytophthora sojae" Genetics 160, 949-959.

  • Tyler, B.M. (2002) "Molecular Basis of Recognition Between Phytophthora species and their hosts." Annual Reviews of Phytopathology. 40,137-167.

  • Jeong, S. C., A. J. Hayes, R. M. Biyashev, and M. A. Saghai Maroof.(2001) "Diversity and evolution of a non-TIR-NBS sequence family that clusters to a chromosomal "hot spot" for disease resistance genes in soybean." Theor. Appl. Genet. 103:406-414.

  • Chamnanpunt, J., Shan, W-X and Tyler, B.M. (2001) "High frequency mitotic gene conversion in genetic hybrids of the oomycete Phytophthora sojae" PNAS 98(25), 14530-14535

  • Hayes, A. J., Y. G. Yue, and M. A. Saghai Maroof.(2000) "Expression of two soybean resistance gene candidates shows divergence of paralogous single copy genes." Theor. Appl. Genet. 101:789-795.

  • Yu, Y. G., G. R. Buss and M. A. Saghai Maroof.(1996)"Isolation of a superfamily of candidate disease resistance genes in soybean based on a conserved nucleotide-binding site." Proc. Natl. Acad. Sci. USA. 93:11751-11756.